An Employee can deposit their pay up to 5 bank accounts depending on the bank that your company has set up under the bank file creation in your payroll process. CPA Standard 005, Royal Bank, and CIBC interfaces can support multiple bank accounts for each employee, while other banks allow only 1 account for direct deposit.
Clarity allows you to pay your employees how you want, whether it's by printing out cheques/checks or by direct deposit. Clarity produces a bank file for you to upload to your bank in order for them to process the payments.